Image plot shows fraction of recruitment in each combination of area and season. This is based on the RECRUITMENT_DIST section of the Report.sso file.
Usage
SSplotRecdist(
replist,
plot = TRUE,
print = FALSE,
areanames = NULL,
seasnames = NULL,
xlab = "",
ylab = "",
main = "distribution of recruitment by area and season",
period = c("Initial", "Benchmark", "End year"),
sexes = 1:2,
plotdir = "default",
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
cex.main = 1,
verbose = TRUE
)Arguments
- replist
A list object created by
SS_output().- plot
Plot to active plot device?
Print to PNG files?
- areanames
optional vector to replace c("Area1","Area2",...)
- seasnames
optional vector to replace c("Season1","Season2",...)
- xlab
optional x-axis label (if the area names aren\'t informative enough)
- ylab
optional y-axis label (if the season names aren\'t informative enough)
- main
title for plot
- period
period of recruitment distribution to show among the options "Initial", "Benchmark", and "End year"
- sexes
either 1 to only plot female distribution, 2 for males, or 1:2 to make both plots
- plotdir
Directory where PNG files will be written.
- pwidth
Default width of plots printed to files in units of
punits.- pheight
Height of plots printed to png files in units of
punits. Default is designed to allow two plots per page, withpheight_tallused for plots that work best with a taller format and a single plot per page.- punits
Units for
pwidthandpheight. Can be "px" (pixels), "in" (inches), "cm" (centimeters), or "mm" (millimeters). The default ispunits="in".- res
Resolution of plots printed to files. The default is
res = 300.- ptsize
Point size for plotted text in plots printed to files (see
help("png")in R for details).- cex.main
Character expansion for plot titles. The default is
cex.main=1.- verbose
A logical value specifying if output should be printed to the screen.