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Plot the summary F (or harvest rate).

Source: R/SSplotSummaryF.R
SSplotSummaryF.Rd

Plots the summary F (or harvest rate) as set up in the starter file Needs a lot of work to be generalized

Usage

SSplotSummaryF(
  replist,
  yrs = "all",
  Ftgt = NA,
  ylab = "Summary Fishing Mortality",
  plot = TRUE,
  print = FALSE,
  plotdir = "default",
  verbose = TRUE,
  uncertainty = TRUE,
  add = FALSE,
  pwidth = 6.5,
  pheight = 5,
  punits = "in",
  res = 300,
  ptsize = 10,
  mar = NULL
)

Arguments

replist

A list object created by SS_output().

yrs

Which years to include.

Ftgt

Target F where horizontal line is shown.

ylab

Y-axis label.

plot

Plot to active plot device?

print

Print to PNG files?

plotdir

Directory where PNG files will be written.

verbose

A logical value specifying if output should be printed to the screen.

uncertainty

Show 95% uncertainty intervals around point estimates?

add

add to existing plot

pwidth

Default width of plots printed to files in units of punits.

pheight

Height of plots printed to png files in units of punits. Default is designed to allow two plots per page, with pheight_tall used for plots that work best with a taller format and a single plot per page.

punits

Units for pwidth and pheight. Can be "px" (pixels), "in" (inches), "cm" (centimeters), or "mm" (millimeters). The default is punits="in".

res

Resolution of plots printed to files. The default is res = 300.

ptsize

Point size for plotted text in plots printed to files (see help("png") in R for details).

mar

Either NULL to allow the default (which depends on whether the main title is included or not) or a numerical vector of the form c(bottom, left, top, right) which gives the number of lines of margin to be specified on the four sides of the plot, which is passed to par().

See also

SSplotTimeseries()

Author

Allan Hicks