make table comparing quantities across models

Creates a table comparing key quantities from multiple models, which is a reduction of the full information in various parts of the list created using the SSsummarize function.

Usage

SStableComparisons(
  summaryoutput,
  models = "all",
  likenames = c("TOTAL", "Survey", "Length_comp", "Age_comp", "priors", "Size_at_age"),
  names = c("Recr_Virgin", "R0", "steep", "NatM", "L_at_Amax", "VonBert_K", "SSB_Virg",
    "Bratio_2025", "SPRratio_2024"),
  digits = NULL,
  modelnames = summaryoutput[["modelnames"]],
  csv = FALSE,
  csvdir = "workingdirectory",
  csvfile = "parameter_comparison_table.csv",
  verbose = TRUE,
  mcmc = FALSE
)

Arguments

summaryoutput

list created by SSsummarize

models

optional subset of the models described in summaryoutput. Either "all" or a vector of numbers indicating columns in summary tables.

likenames

Labels for likelihood values to include, should match substring of labels in summaryoutput[["likelihoods"]].

names

Labels for parameters or derived quantities to include, should match substring of labels in summaryoutput[["pars"]] or summaryoutput[["quants"]].

digits

Optional vector of the number of decimal digits to use in reporting each quantity.

modelnames

optional vector of labels to use as column names. Default is summaryoutput[["modelnames"]].

csv

write resulting table to CSV file?

csvdir

directory for optional CSV file

csvfile

filename for CSV file

verbose

A logical value specifying if output should be printed to the screen.

mcmc

summarize MCMC output in table?

See also

Other model comparison functions: SSgetoutput(), SSplotComparisons(), SSsummarize()

Author

Ian Taylor