DiagnosticTables

Estimated parameters (excluding deviation parameters)
Any parameter with a gradient value with an absolute value above 0.001 or a parameter on bounds is colored in red.
file:
parameterchecks.html

Parameter Value Phase Min Max Init Status Parm_StDev Gradient Pr_type Prior Pr_SD Pr_Like Afterbound
NatM_uniform_Fem_GP_1 0.449208 3 0.100 0.6 0.449208 OK 0.0305510 3.19359e-07 Log_Norm -1.02165 0.438 0.1277320 OK
L_at_Amin_Fem_GP_1 20.082100 2 10.000 40.0 20.082100 OK 1.0314100 -1.38718e-07 No_prior NA NA NA OK
Linf_Fem_GP_1 175.663000 2 100.000 300.0 175.663000 OK 4.0044900 -5.86967e-08 No_prior NA NA NA OK
VonBert_K_Fem_GP_1 12.140700 1 0.005 30.0 12.140700 OK 0.3580360 -9.79241e-07 No_prior NA NA NA OK
Cessation_Fem_GP_1 5.610090 3 0.100 10.0 5.610090 OK 11.8509000 -7.47689e-09 No_prior NA NA NA OK
SD_young_Fem_GP_1 5.702740 5 1.000 20.0 5.702740 OK 0.9011410 -1.14107e-07 No_prior NA NA NA OK
SD_old_Fem_GP_1 7.084120 5 1.000 20.0 7.084120 OK 0.9204520 -2.56021e-08 No_prior NA NA NA OK
Linf_Mal_GP_1 -0.373076 2 -1.000 1.0 -0.373076 OK 0.0251082 -1.98637e-07 No_prior NA NA NA OK
VonBert_K_Mal_GP_1 0.100981 3 -10.000 20.0 0.100981 OK 0.0339790 -1.00989e-05 No_prior NA NA NA OK
SR_LN(R0) 8.904690 3 5.000 15.0 8.904690 OK 0.3734850 -3.83946e-07 No_prior NA NA NA OK
LnQ_base_WCGBTS(5) -0.403308 1 -2.000 2.0 -0.403308 OK 0.3154050 -1.17472e-07 Normal -0.35500 0.326 0.0109792 OK
Q_extraSD_WCGBTS(5) 0.163264 1 0.000 2.0 0.163264 OK 0.0573576 1.44089e-08 No_prior NA NA NA OK
LnQ_base_Triennial(6) -1.252400 1 -10.000 2.0 -1.252400 OK 0.7431200 -4.46425e-08 No_prior NA NA NA OK
Q_extraSD_Triennial(6) 0.365954 1 0.000 2.0 0.365954 OK 0.1464040 4.50089e-08 No_prior NA NA NA OK
LnQ_base_Triennial(6)_BLK1repl_1995 -0.934511 1 -7.000 0.0 -0.934511 OK 0.7412080 -1.09594e-08 No_prior NA NA NA OK
Size_DblN_peak_Fishery_current(1) 94.111400 4 80.000 150.0 94.111400 OK 4.8992000 -4.23666e-07 No_prior NA NA NA OK
Size_DblN_ascend_se_Fishery_current(1) 7.153310 4 -1.000 9.0 7.153310 OK 0.1179030 1.41224e-06 No_prior NA NA NA OK
Retain_L_infl_Fishery_current(1) 66.214400 2 15.000 150.0 66.214400 OK 0.6713100 -2.47178e-07 No_prior NA NA NA OK
Retain_L_width_Fishery_current(1) 4.876370 2 0.100 10.0 4.876370 OK 0.3544220 -3.05551e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1) 2.051820 3 -10.000 20.0 2.051820 OK 0.3585410 1.34351e-08 No_prior NA NA NA OK
SzSel_Fem_Peak_Fishery_current(1) -5.521930 4 -50.000 50.0 -5.521930 OK 2.1623300 -2.72465e-07 No_prior NA NA NA OK
SzSel_Fem_Scale_Fishery_current(1) 0.743963 4 0.500 1.5 0.743963 OK 0.0947500 -3.66965e-08 No_prior NA NA NA OK
Size_DblN_peak_WCGBTS(5) 76.147300 4 50.000 150.0 76.147300 OK 6.6384400 4.01058e-08 No_prior NA NA NA OK
Size_DblN_ascend_se_WCGBTS(5) 6.497710 4 -1.000 9.0 6.497710 OK 0.3690520 -8.91596e-08 No_prior NA NA NA OK
Size_DblN_descend_se_WCGBTS(5) 16.548300 5 -1.000 20.0 16.548300 OK 55.8585000 7.3964e-08 No_prior NA NA NA OK
SzSel_Fem_Peak_WCGBTS(5) -7.974700 4 -50.000 50.0 -7.974700 OK 4.1432300 5.82686e-08 No_prior NA NA NA OK
SzSel_Fem_Scale_WCGBTS(5) 0.698111 4 0.500 1.5 0.698111 OK 0.1256970 6.2068e-08 No_prior NA NA NA OK
Size_DblN_peak_Triennial(6) 187.543000 4 50.000 200.0 187.543000 OK 34.6113000 -1.09586e-08 No_prior NA NA NA OK
Size_DblN_ascend_se_Triennial(6) 8.472360 4 -1.000 9.0 8.472360 OK 0.4203350 2.0856e-08 No_prior NA NA NA OK
Size_DblN_start_logit_Triennial(6) -4.794170 4 -15.000 9.0 -4.794170 OK 0.7840660 7.81305e-08 No_prior NA NA NA OK
SzSel_Fem_Scale_Triennial(6) 0.606512 4 0.500 1.5 0.606512 OK 0.1302870 -4.04254e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2005 2.300330 4 -10.000 20.0 2.300330 OK 0.5651780 1.63424e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2006 3.303950 4 -10.000 20.0 3.303950 OK 1.3021700 -7.84283e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2007 3.962990 4 -10.000 20.0 3.962990 OK 1.9778000 5.00009e-09 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2008 11.079300 4 -10.000 20.0 11.079300 OK 112.0400000 1.0912e-07 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2009 4.912410 4 -10.000 20.0 4.912410 OK 3.7121700 -4.33094e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2010 13.241800 4 -10.000 20.0 13.241800 OK 88.1326000 -4.96809e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2011 14.640600 4 -10.000 20.0 14.640600 OK 74.0295000 1.28166e-07 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2012 13.892100 4 -10.000 20.0 13.892100 OK 81.5170000 1.61868e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2013 3.455660 4 -10.000 20.0 3.455660 OK 0.3334540 -4.1404e-08 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2014 3.620060 4 -10.000 20.0 3.620060 OK 0.2765240 1.32105e-07 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2015 3.405000 4 -10.000 20.0 3.405000 OK 0.2609060 1.92819e-07 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2016 2.884760 4 -10.000 20.0 2.884760 OK 0.1921590 -2.82635e-07 No_prior NA NA NA OK
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2017 2.817190 4 -10.000 20.0 2.817190 OK 0.1926940 -3.09577e-07 No_prior NA NA NA OK

Highly correlated parameter pairs
Pairs of parameters with the 50 highest correlations, sorted by absolute value of the correlation. Correlations above 0.95 (in absolute value) are colored in red. These parameters may be confounded or may cause convergence issues.
file: correlationcheck.html

label.i label.j corr
Size_DblN_ascend_se_Triennial(6) Size_DblN_peak_Triennial(6) 0.95239
SzSel_Fem_Scale_Fishery_current(1) SzSel_Fem_Peak_Fishery_current(1) 0.891429
Size_DblN_ascend_se_WCGBTS(5) Size_DblN_peak_WCGBTS(5) 0.891409
Linf_Mal_GP_1 Linf_Fem_GP_1 -0.887126
Size_DblN_ascend_se_Fishery_current(1) Size_DblN_peak_Fishery_current(1) 0.866743
Size_DblN_start_logit_Triennial(6) Size_DblN_peak_Triennial(6) -0.854274
LnQ_base_Triennial(6)_BLK1repl_1995 LnQ_base_Triennial(6) 0.846458
LnQ_base_WCGBTS(5) SR_LN(R0) -0.781032
Size_DblN_peak_Triennial(6) LnQ_base_Triennial(6)_BLK1repl_1995 0.750762
Size_DblN_peak_Triennial(6) LnQ_base_Triennial(6) 0.74894
Size_DblN_start_logit_Triennial(6) Size_DblN_ascend_se_Triennial(6) -0.737543
Size_DblN_start_logit_Triennial(6) LnQ_base_Triennial(6)_BLK1repl_1995 -0.706958
SR_LN(R0) NatM_uniform_Fem_GP_1 0.705588
Size_DblN_start_logit_Triennial(6) LnQ_base_Triennial(6) -0.705152
SzSel_Fem_Scale_WCGBTS(5) SzSel_Fem_Peak_WCGBTS(5) 0.66636
Size_DblN_ascend_se_Triennial(6) LnQ_base_Triennial(6)_BLK1repl_1995 0.647734
Size_DblN_ascend_se_Triennial(6) LnQ_base_Triennial(6) 0.646122
Size_DblN_peak_Fishery_current(1) NatM_uniform_Fem_GP_1 0.639503
SzSel_Fem_Peak_WCGBTS(5) Size_DblN_peak_WCGBTS(5) -0.597631
VonBert_K_Mal_GP_1 VonBert_K_Fem_GP_1 -0.588667
SzSel_Fem_Scale_Fishery_current(1) VonBert_K_Mal_GP_1 0.545318
Size_DblN_ascend_se_Fishery_current(1) L_at_Amin_Fem_GP_1 0.527278
SzSel_Fem_Peak_Fishery_current(1) VonBert_K_Mal_GP_1 0.493761
Size_DblN_start_logit_Triennial(6) NatM_uniform_Fem_GP_1 -0.492378
VonBert_K_Fem_GP_1 L_at_Amin_Fem_GP_1 -0.458698
LnQ_base_Triennial(6) LnQ_base_WCGBTS(5) 0.450996
LnQ_base_Triennial(6)_BLK1repl_1995 LnQ_base_WCGBTS(5) 0.446064
SzSel_Fem_Peak_Fishery_current(1) Size_DblN_peak_Fishery_current(1) -0.397852
Size_DblN_peak_Fishery_current(1) SR_LN(R0) 0.388616
SzSel_Fem_Peak_WCGBTS(5) Size_DblN_ascend_se_WCGBTS(5) -0.38649
Size_DblN_peak_Fishery_current(1) L_at_Amin_Fem_GP_1 0.379554
Retain_L_infl_Fishery_current(1) Size_DblN_ascend_se_Fishery_current(1) 0.366079
SzSel_Fem_Scale_Fishery_current(1) Size_DblN_peak_Fishery_current(1) -0.365267
SzSel_Fem_Scale_WCGBTS(5) Size_DblN_peak_WCGBTS(5) -0.353861
SzSel_Fem_Scale_Triennial(6) LnQ_base_Triennial(6)_BLK1repl_1995 -0.344678
SzSel_Fem_Scale_Triennial(6) LnQ_base_Triennial(6) -0.34443
Size_DblN_start_logit_Triennial(6) Size_DblN_peak_Fishery_current(1) -0.34184
SzSel_Fem_Scale_Triennial(6) VonBert_K_Mal_GP_1 0.328614
Size_DblN_peak_WCGBTS(5) NatM_uniform_Fem_GP_1 0.326654
SzSel_Fem_Scale_WCGBTS(5) VonBert_K_Mal_GP_1 0.318631
Retain_L_width_Fishery_current(1) Retain_L_infl_Fishery_current(1) -0.307307
SD_old_Fem_GP_1 Cessation_Fem_GP_1 0.300836
Size_DblN_peak_WCGBTS(5) Size_DblN_peak_Fishery_current(1) 0.295943
Size_DblN_start_logit_Triennial(6) SR_LN(R0) -0.295256
SD_old_Fem_GP_1 SD_young_Fem_GP_1 -0.293638
SzSel_Fem_Scale_Triennial(6) Size_DblN_start_logit_Triennial(6) 0.281782
Size_DblN_ascend_se_Fishery_current(1) NatM_uniform_Fem_GP_1 0.277587
Size_DblN_peak_WCGBTS(5) SR_LN(R0) 0.272445
SzSel_Fem_Scale_Triennial(6) Size_DblN_peak_Triennial(6) -0.262286
SzSel_Fem_Scale_Fishery_current(1) VonBert_K_Fem_GP_1 -0.252444

Parameters with low correlations
Estimated parameters that are the least correlated with all other parameters. The correlation value represents the maximum correlation between the parameter in question and all other estimated parameters. Uncorrelated parameters may not be playing a significant role in the model. Maximum correlations below 0.01 are colored in red.
file: lowcorrelationcheck.html

Parameter max_correlation
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2010 0.000738978
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2011 0.000876332
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2008 0.00200917
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2012 0.00204038
Size_DblN_descend_se_WCGBTS(5) 0.0203638
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2005 0.0301127
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2006 0.0307291
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2007 0.0385504
Q_extraSD_Triennial(6) 0.0407532
Q_extraSD_WCGBTS(5) 0.0440789
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2009 0.052469
Retain_L_asymptote_logit_Fishery_current(1) 0.0604501
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2013 0.20608
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2017 0.209192
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2016 0.214803
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2015 0.215614
Retain_L_asymptote_logit_Fishery_current(1)_BLK2repl_2014 0.236566
SD_young_Fem_GP_1 0.293638
Cessation_Fem_GP_1 0.300836
SD_old_Fem_GP_1 0.300836
Retain_L_width_Fishery_current(1) 0.307307
SzSel_Fem_Scale_Triennial(6) 0.344678
Retain_L_infl_Fishery_current(1) 0.366079
L_at_Amin_Fem_GP_1 0.527278
VonBert_K_Fem_GP_1 0.588667
VonBert_K_Mal_GP_1 0.588667
SzSel_Fem_Peak_WCGBTS(5) 0.66636
SzSel_Fem_Scale_WCGBTS(5) 0.66636
NatM_uniform_Fem_GP_1 0.705588
SR_LN(R0) 0.781032
LnQ_base_WCGBTS(5) 0.781032
LnQ_base_Triennial(6) 0.846458
LnQ_base_Triennial(6)_BLK1repl_1995 0.846458
Size_DblN_start_logit_Triennial(6) 0.854274
Size_DblN_peak_Fishery_current(1) 0.866743
Size_DblN_ascend_se_Fishery_current(1) 0.866743
Linf_Fem_GP_1 0.887126
Linf_Mal_GP_1 0.887126
Size_DblN_peak_WCGBTS(5) 0.891409
Size_DblN_ascend_se_WCGBTS(5) 0.891409
SzSel_Fem_Peak_Fishery_current(1) 0.891429
SzSel_Fem_Scale_Fishery_current(1) 0.891429
Size_DblN_peak_Triennial(6) 0.95239
Size_DblN_ascend_se_Triennial(6) 0.95239